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- 2. The mechanism of HMG-CoA reducatse enzyme activity involves several stages. For the catalytic reaction to proceed, another substrate known as NADPH, which acts as a reducing agent is required. The kinetics of enzyme activity with NADPH at non-limiting amounts of HMG-CoA in the absence or presence of compactin is shown below. a) Based on the description above, which of the six types of enzymes does HMG-CoA reductase belong to? b) What is the Km for the reaction with no inhibitor present? Do NOT forget the units. Answers can be expressed either as a fraction or in decimals. c) What happens the measured Km with increasing amounts of compactin? (select one) increases decreases does not change d) What happens to the measured Vmax with increasing amounts of compactin? (select one) increases decreases does not change e) Based on your answers above, what type of inhibitor is compactin relative to its effects on enzyme activity NADPH? with -60 -40 1/V, (nanomoles/min)-1 -20 0.2 0.18 0.16…6. The five steps involved in conversion of pyruvate to acetyl-CoA are listed below. For each step, list the enzyme(s) that are involved. 1. Decarboxylate pyruvate 2. Reduction of lipoic acid 3. Transfer of acetyl group to coenzyme A 4. Reoxidation of lipoic acid 5. Reoxidation of FADH2 → FAD12.The two carbons in an acetyl-CoA are released as CO, only in the second turn of the citric acid cycle. Explain why this is so.
- 1. Outline the first round of lipid catabolism using a C18 saturated fatty acid. Indicate cofactors and type of chemistry that takes place. a. How much NADH, FADH2 and ACCOA are you getting from complete catabolism of this fatty acid? b. How many moles of ATP are you getting from the breakdown of this fatty acid? Keep in mind that in the mitochondria 1 mole FADH2 gives about 1.5 moles of ATP while 1 mole NADH yields about 2.5 moles of ATP.10. General equation of anaerobic oxidation of glucose.'. If oxidation of acetyl-CoA yields 10 ATPS per mole through the cit- ric acid cycle, how many ATPS will be derived from the complete metabolic oxidation of 1 mole of alanine in a mammal? Would the corresponding energy yield in a fish be higher or lower? Why? How much energy would be derived from the metabolic oxidation of I mole of isoleucine to CO, H,0, and NH3? Of tyrosine?
- 8. The enzyme thiolase catalyzes one step in the ß-oxidation of saturated fats. One portion of the mechanism for this reaction is shown below. Describe the catalytic mechanism at work. (Note: "SCOA" is shorthand for the compound Acetyl-CoA) RCOCH₂COSCoA + HSCOA → H3C₂OSC0A + RCOSCOA HN NH CH₂ NH CH₂ CH₂ FS Grease NH3 H-SCO A NH CH2 CH₂ NH3 S Co A CH₂ NH 1 3 H-SCO A H3C SCO A NH3 a h-SCOA R-C S Co A CH₂ CH₂ C H₂ 0=0 HN NH + NH3 H₂C HN CH₂ NH CH₂ CH₂ 2 S Co A CH₂ NH NH1) Tabulate the differences and/ or similarities of the different kinds of coenzymes and cofactors. Structure Source ATP SAM COA Retinal THF- tetrahydrofolate Vitamin K NAD, NADP FMN, FAD TPP PLP Adenosylcobalamin methylcobalamin and Function/ Role/ Importance1. Consider the oxidation of the fatty acid with the common name arachidic acid. a. Draw the structure of arachidic acid. b. How many turns of the fatty acid oxidation cycle is required for the complete oxidation of arachidic acid? c. How many moles of ATP are formed from one mole of arachidic acid if the acetyl CoA produced go to the citric acid cycle and oxidative phosphorylation? Assume 1 mole of NADH is equivalent to 3 moles ATP and 1 mole FADH2 is equivalent to 2 moles of ATP. Show how you arrived at your answer
- 1. Biotin is an essential cofactor for carboxylases that transfer carbon dioxide. Choose one of the enzymes and describe the reaction and the role of biotin 2. Describe and discuss the metabolic roles of coenzyme A (CoA).17. Omeprazole is a bioprecursor prodrug that is activated by protonation to give active metabolite that inhibits H¨,K*-ATPase covalently. By using chemical equations show activation of Omeprazole and its reaction to inhibit the H*,K*-ATPase. CH3 H3CO. s=0 H3C HNN Omeprazole OCH3 18. The following compound is an open-chain prodrug of benzodiazepines which undergo N- dealkylation to triazolam. Using chemical equations show transformation of this prodrug to triazolam. H3C H3C CH3 CH3 triazolam open-chain prodrug of triazolam2. 'a) List the number of NADH and FADH2 equivalents formed and the corresponding number or ATP equivalents generated by mitochondrial oxidation of one molecule of CH3(CH2)12-COSCOA Number of NADH or Number of ATP Enzyme catalyzing the oxidation step FADH, formed ultimately formed B Oxidation Acyl-CoA dehydrogenase B-Hydroxyacyl-CoA dehydrogenase Citric acid cycle Isocitrate dehydrogenase a-Ketoglutarate dehydrogenase Succinyl-CoA synthetase Succinate dehydrogenase Malate dehydrogenase Total "These calculations assume that mitochondrial oxidative phosphorylation produces 1.5 ATP per FADH2 oxidized and 2.5 ATP per NADH oxidized. "GTP produced directly in this step yields ATP in the reaction catalyzed by nucleoside diphosphate kinase (p. 516). For all of the questions below, assume that respiratory activity of mitochondria is supported by CH3(CH2)12-COSCOA in the presence of excess ADP (+ P). (b) How many ATP equivalents will be generated in the presence of the inhibitor rotenone? Give a…
