Directions: Solve the following problem:The enzyme ẞ-methylaspartase catalyzes the deamination of ẞ-methylaspartate:CH,NH,CHOOC-CH-CH-COOOOC-CH-CH-COO+NHmesaconateWilliams and SelbinThe effects of hydroxymethylaspartate as an inhibitor for this enzyme was studied. The following data werSubstrate Concentrationobtained:Reaction Rate withoutinhibitor(mM)1 × 10-45 x 10-41.5 x 10-32.5 x 10-35 x 10-3(mM/s)0.0260.0920.1360.1500.165Reaction Rate with inhibitor(mM/s)0.0100.0400.0860.1200.142Use Lineweaver-Burk plot to determine the KM and Vmax of the enzyme in the absence of inhibitor.Moreover, determine as well whether the inhibitor is competitive or noncompetitive. Show the graphs andcalculations below.

The Lineweaver-Burk plot, also known as a double reciprocal plot, is a graphical representation of…

Answered: The effects of hydroxymethylaspartate…

Biochemistry

9th Edition

ISBN:9781319114671

Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Chapter1: Biochemistry: An Evolving Science

Section: Chapter Questions

Problem 1P

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The accompanying figure shows three Lineweaver–Burk plots for enzymereactions that have been carried out in the presence, or absence, of aninhibitor. Indicate what type of inhibition is predicted based on eachLineweaver–Burk plot. For each plot indicate which line corresponds to thereaction without inhibitor and which line corresponds to the reaction withinhibitor present.
Calculcate Kcat for PNP substrate for both enzyme concentrations. enzyme volume: 20 ul Bovine Intensince Alkaline phosphatase molecular weight: 140,000 Bovine intenstine Alkaline phosphatase activity: 300 units/ml and 14 units/mg extinction coefficient PNP: 18.5 abs (mM-1 cm-1) Vmax: 0.332 moles/sec a) enzyme 1 concentration: undiluted b) enzyme 2 concentration: 1:1 dilution
Given the active site and reaction mechanism below, what is the mechanism of irreversible inhibition of the inhibitor provided? NH+ Active Site Mn²+ *H₂N. HN N NH H₂ Mn²+ +H₂N. HN H₂N "NH₂ Non-specific inhibition Uncompetitive Inhbitor I Transition State Analog Affinity-based inhibition Mechanism-Based Inhibition Reaction Mechanism HN NH *H₂N HN HẠN TÌNH, 2+Mn Mn²+ ‡ +H₂N. H₂N H₂N NH₂ Inhibitor i *H₂N. B но в он OH View site informat
Given the active site and reaction mechanism below, what is the mechanism of irreversible inhibition of the inhibitor provided? NH* Active Site *H₂N. HN NH₂ +H₂N HN H₂N NH₂* Non-specific inhibition Uncompetitive Inhbitor Transition State Analog i Affinity-based inhibition Mechanism-Based Inhibition Reaction Mechanism *H₂N. NH HN- HN [*] H₂N NH₂ 2+Mn Mn²+ i +H₂N. H₂N i H₂N NH₂ HO Inhibitor *H₂N. B OH r View site informati
You will perform the protocol below for the calf intestinal alkaline phosphatase (CIP) provided. For each reaction, your final enzyme concentration should be 10 nM CIP. Note: Enzymes purchased are typically labelled with their “units of activity” (U), as this relates to how much enzyme is needed to catalyze a reaction. The 100 nM CIP provided has approximately 3 U/mL and was diluted 1 in 1,000 from a 500 U/mL purchased enzyme. 1) Create a table (similar to the one below) to help you determine and keep track of what to add to each of the cuvettes in which your reactions will be measured. The five different concentrations of PNPP should be: 25, 50, 100, 200, 300 μM. Each reaction will be in a final volume of 1 mL and contain 10 nM alkaline phosphatase. Concentrations of stock solutions: 1.0 mM PNPP, 100 nM calf intestinal phosphatase
Mechanisms of catalysis : 2.1 Acid-base catalysis summary + example 2.2 Electrostatic catalysis summary + example 2.3 Covalent catalysis summary + example 2.4 Enzymen catalysis summary 2.5 Mechanism of chymotrypsin summary. These mechanisms involve several of the above-mentioned catalyses. In these summaries, do not just draw a diagram of the proposed mechanisms. It is more important to understand which reaction steps involve what kind of catalysis and how these help to reduce the activation energy needed for the reaction (e.g. a step in the reaction mechanism could be electrostatic catalysis to stabilise the transitions state) 2.6 Mechanism of lysozyme summary. These mechanisms involve several of the above-mentioned catalyses. In these summaries, do not just draw a diagram of the proposed mechanisms. It is more important to understand which reaction steps involve what kind of catalysis and how these help to reduce the activation energy needed for the reaction (e.g.…
41 The following data describe an enzyme-catalyzed reaction (hydrolysis of carbobenzoxyglycyl-L-tryptophan) Plot these results using the Lineweaver-Burk method, and determine values for KM and Vmax Velocity (mM.sec-) 0 024 0 036 0 053 0 060 0 061 0 062 Substrate Concentration (mM) 25 50 10 0 15 0 200 25 0 42 If the KM of an enzyme for its substrate remains constant as the concentration of the inhibitor increases, what can be said about the mode of inhibition and why? 43 Calculate the turnover number for an enzyme, assumıng Vmax IS 05 M sec1 and the concentration of the enzyme used is 0 002 M Why is it useful to know this? 44 Dıscuss the mechanism of the Bohr effect that occurs during the interactions of Hb with oxygen under physiological conditions in the lungs and tissues Make use of relevant graphs and diagrams to explain your answer
USSE EUSS reaction rate substrate concentration Blue line - Enzyme alone Red line - Enzyme + unknown compound The 4 graphs above represent the change in enzyme kinetics with the individual addition of different compounds that could be categorized as either: allosteric inhibitors, allosteric activators, competitive inhibitors, activators or non-competitive inhibitors. Review the graphs above. Each graph represents the activity of an enzyme and the enzyme + the addition of an unknown compound. By comparing the kinetics of the enzyme alone to the enzyme + unknown, determine what type of compound was added to each of the 4 different solutions to elicit the observed change.
A catalyst like lactase that assists in the metabolism od milk is best described as Group of answer choices homogeneous heterogeneous enzymatic non-truseable 7, What graph will demonstrate that experimental concentration data fit a second-order reaction? Group of answer choices ln[reactant] vs. time ln(k) vs. 1/T 1/[reactant] vs. time [reactant] vs. time ln(k) vs. Ea
What enzyme kinetic parameters are apparantly impacted by uncompetitive inhibitors? Vmax Km Both Km and Vmax Neither Km nor Vmax
What is the catalytic efficiency of Catalase ? Table. The values of KM and kcat for some Enzymes and Substrates Enzyme Carbonic anhydrase Substrate CO2 HCO3 KM (M) 1.2 x 10-2 2.6 x 10-2 Kcat (s-1) 1.0 x 106 4.0 x 105 Catalase H2O2 2.5 x 10-2 1.0 x 107 Urease Urea 2.5 x 10-2 4.0 x 105 O A. 4 x 108 M-s-1 O B. 4 x 108 M-1.s-1 OC25x 10-9 M-s1 D. 2.5 x 102 M-1.s-1 OE 1.0 x 107 s1
The following data were obtained in a study of an enzyme that is known to follow the Michaelis-Menten kinetics. Approximately, what is the value of Km tor this enzyme? Substrate added, umol/L Vo uM/sec 48 97 175 187 192 197 2 16 100 1000 198 OA 1 uM O8.2 pM OC 4 uM. OD. 8 uM OE 16 IM OF 1000 uM OG 97 uM/sec OH 175 UM/sec

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